2006
Mack E Crayton III, Bradford C Powell, Todd J Vision and Morgan C Giddings. Tracking the evolution of alternatively spliced exons within the Dscam family. BMC Evolutionary Biology 2006, 6:16. Link to open access paper.

2005
Wisz, M.S., Khatun, J., and Giddings, M.C. Computational methods enabling genome-based protein identification from large, complex genomes using mass spectrometry data. in Third IEEE Workshop on Genomic Signal Processing and Statistics (GENSIPS). 2005. Newport, RI. PDF

2004
Wisz, M.S., Suarez, M.K., Holmes, M.R., and Giddings, M.C., GFSWeb: a web tool for genome-based identification of proteins from mass spectrometric samples. J Proteome Res, 2004. 3(6): p. 1292-5. Summary.

Holmes, M.R. and Giddings, M.C., Prediction of posttranslational modifications using intact-protein mass spectrometric data. Anal Chem, 2004. 76(2): p. 276-82. PubMed Abstract.

2003
Giddings, M.C., Shah, A.A., Gesteland, R.F., and Moore, M.B. (2003). “Genome-based peptide fingerprint scanning.” Proc. Nat. Acad. Sci. USA. 100(1):20-25. Abstract. Faculty of 1,000 "Recommended" Rating (Faculty of 1000 Biology: evaluations for Giddings MC et al Proc Natl Acad Sci U S A 2003 Jan 7 100 (1):20-5)

2002
Giddings, M.C., Shah, A.A., Freier, S., Atkins, J.F., Gesteland, R.F. and Matveeva, O.V. 2002. Artificial neural network prediction of antisense oligodeoxynucleotide activity. Nucleic Acids Res., 30(19), 4295-304 Abstract

Shah, A.A., Giddings, M.C., Parvaz, J.B., Gesteland, R.F., Atkins, J.F., and Ivanov, I.P., Computational identification of putative programmed translational frameshift sites. Bioinformatics, 2002. 18(8): 1046-53. Abstract.

M.V. Buchanan, F.W. Larimer, H.S. Wiley, S.J. Kennel, T.J. Squier, J.M. Ramsey, K.D. Rodland, G.B. Hurst, R.D. Smith, Y. Xu, D. Dixon, M.J. Doktycz, S. Colson, R. Gesteland, C. Giometti, M. Young, and M. Giddings. 2002. Genomes to Life “Center for Molecular and Cellular Systems”: A Research Program for Identification and Characterization of Protein Complexes. Omics, A Journal of Integrative Biology. 6(4):287-304 Abstract

Prior to 2002
Williams P.S., Giddings M.C., Giddings J.C. 2001. A data analysis algorithm for programmed field-flow fractionation. Analytical Chemistry. 73(17):4202-11 Abstract.

Baranov, P.V., Gurvich, O.L., Fayet, O., Prere, M.F., Miller, W.A., Gesteland, R.F., Atkins, J.F., and Giddings M.C. 2001 Recode: A Database of Frameshifting, Bypassing and Codon Redefinition utilized for gene expression. Nucleic Acids Research, 29(1):264-267 Abstract.

Giddings, M., Matveeva, O., Atkins, J., and Gesteland, R. 2000. ODNBase - A web database for antisense oligonucleotide effectiveness studies. Bioinformatics, 16(9):843-844. Abstract.

Matveeva, O.V., Tsodikov, A.D., Giddings, M., Freier, S.M., Wyatt, J.R., Spiridonov, A.N., Shabalina, S.A., Gesteland, R.F., and Atkins, J.F. 2000. Identification of sequence motifs in oligonucleotides whose presence is correlated with antisense activity. Nucleic Acids Res., 28(15):2862-2865 Abstract.

Giddings, M.C., Severin, J., Westphall, M., Wu, J., and Smith, L.M. 1998. A software system for data analysis in automated DNA sequencing, Genome Research, 8(6):644-665 Abstract.

Yin, Z., Severin, J., Giddings, M., Huang, W., Westphall, M.S., and Smith, L.M. 1996. Automatic matrix determination in 4-dye fluorescence-based DNA sequencing. Electrophoresis. 17, 1143-1150.

Chen, D., Peterson, M.D., Brumley, R. L. Jr., Giddings, M.C., Buxton, E.C., Westphall, M., Smith, L., and Smith, L.M. 1995. Side excitation of fluorescence in ultrathin slab gel electrophoresis. Analytical Chemistry. 67(19), 3405-3411.

Smith, L. M., Brumley, R. L., Buxton, E., Giddings, M., Marchbanks, M. and Tong, X. High speed automated DNA sequencing in ultra thin slab gels. Methods in Enzymology. 1995; 271:219-237.

Giddings, M.C., Brumley, R.L., Haker, M., and Smith, L.M. 1993. An adaptive, object-oriented strategy for base calling in DNA sequence analysis. Nucleic Acids Res. 21(19), 4530-4540.